Welcome to HiTIPS’s documentation!¶
Contents:
- hitips
- Installation
- Example Datasets
- Usage Guide
- Key Features
- HiTIPS user interface
- Data loading from CellVoyager
- Loading plate information from CellVoyager
- Loading Bioformat image files
- Loading Configuration File
- Image Display window
- Adjusting channel intensities
- Visualizing nuclei segmentation results
- Visualizing spot detection results
- Nuclei Detection Parameter Setting
- Spot Channels
- Spot Detection Method
- Nuclei and Spot Tracking
- Results
- Running Batch Analysis
- Results
- Troubleshooting
- Reporting Issues
- Installation troubleshooting
- General Usage Tips
- Resolve Installation Issue for deepcell-toolbox
- 1. Install Visual Studio
- 2. Install Microsoft C++ Build Tools
- 3. Run the Installer
- 4. Restart Your Computer
- 5. Re-attempt Installation
- Resolve Installation Issue for fastremap
- 1. Install numpy
- 2. Re-attempt Installation
- Adding Analysis Module
- Creating a Pull Request
- Merging the Pull Request
- Define the New Nuclei Detection Module
- Integrate the New Nuclei Module
- Integrate the New Nuclei Detection Module into the GUI
- Define the New Spot Detection Module
- Integrate the New Spot Detection Module
- Integrate the New Spot Detection Module into the GUI
- Test Your Modules
- Update the Documentation
- Commit Your Changes
- Conclusion
- Citing HiTIPS